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Chemistry of Bacterial Chemical Communication 

Characterization of Changes in Molecular Structure and Activity of Autoinducer Molecules Revlevant to Bacterial Chemical Communication.

Funding:  National Science Foundation (NSF) - Collaborative Research in Chemistry (CRC) Program; 2005-2009

PI: A. Decho; Co-PIs: J. Ferry, M. Angel, L. Ferguson
 

A fundamental property of bacteria adaptation and flexibility is their ability to communicate using chemical signaling, a process called “quorum sensing”. Quorum sensing is linked to many bacterial activities that are important to health, industry and technology, such as antibiotic production, plasmid transfer, virulence in human, animal and plant pathogens, and biofilm formation.

Our studies investigate the exciting and unique chemistry of quorum sensing. We are funded by a four-year project, through the NSF Collaborative Research in Chemistry (CRC) Program. Chemical signaling depends on small diffusible molecules, called ‘autoinducers”.  Acylated homoserine lactones’ (AHLs) are a major class of autoinducers present in gram-negative bacteria, and consist of a lactone ring having an amide-linked acylated side chain varying in length and substitution at the third C position.  It is known that signal specificity stems from subtle differences in the chemical structure of autoinducer molecules and their regulatory protein receptors.  However, chemical signals, once released outside the cell into the extracellular environment, are exposed to a plethora of natural stressors that may potentially alter their chemical structure. These include fluctuations in pH, oxidants, temperature, photocatalytic processes and transition metal concentrations. These alterations have the potential to change signal specificity, the mobility and fate of autoinducers such as AHLs, and efficiency of quorum sensing in natural environments. Quorum sensing, thus, provides a platform for important, fundamental chemistry.

We are addressing four key issues regarding the chemistry of quorum sensing autoinducers (AHLs): (1) How do specific Environmental Stressors modify AHL Molecules?  (2)  How do changes to AHLs alter Complexation to Regulatory Proteins; (3) Which changes in AHL/Protein Binding Result in changes in Gene Expression? (4) Can Raman and fluorescence-lifetime signatures be used to Image/ Quantify in-situ intact and altered AHLs? We are developing multivariate models of AHL hydrolysis, particularly the effects of key environmental variables on the equilibrium constant for the lactone functionality.  The derived models will be used to map out those areas of where more fundamental, molecular explorations of the system are warranted (e.g. the thermodynamics of ring-opening in a non-polar environment). Our investigations employ a range of state-of-the-art approaches (e.g. surface plasmon resonance, Raman-confocal, surface-enhanced Raman using nanoparticles).

Fig. 1. Chemical structure of an acylated homoserine lactone (AHL). The length (and substitutions) of AHLs confers signal specificity, and may be altered by geochemical conditions once outside the cell. We are understanding how such subtle changes to AHLs alter their activities and functions.


Fig. 2. Bacteria in proximity release chemical signals (e.g. AHLs). Their recognition by cells in proximity effect a density-dependent response, called ‘quorum sensing’, which results in changes in gene expression. This allows groups of bacteria to coordinate certain activities. The natural environment presents many geochemical and photochemical changes to the quorum sensing process. As AHLs diffuse through the extracellular environment (between cells) they may be altered by pH, oxidants, ions and other environmental stressors. This may change their ability to complex to receptor proteins (once inside the cell), and alter gene expression.
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