Brain Imaging Workshop Index

MRIcron is used to map and analyse brain injury. MRIcron manuals - software for lesion plotting. MRIcron tutorial - describes lesion analysis. FSL is used to measure brain activation and connectivity. Instructions for installing FSL. DTI tutorial - mapping white matter. fMRI tutorial - standard block design analysis of brain activation. (also for SPM) efMRI tutorial - event related fMRI. Voxel based morphometry can examine subtle brain atrophy (we will not use this with stroke). NPM tutorial - an example of an NPM analysis. McCausland Brain Imaging Center Notes. Creating fMRI experiments. Data transfer - getting images from and to the scanner. Standard protocols - some sample images from our Trio. Software for these tutorials MRIcron software which includes NPM. A sample dataset mricrondata.zip with simulated lesion data for MRIcron, described in the MRIcron lesion tutorial. dtidata.zip. - DICOM format DTI files for the DTI tutorial page. You can convert these to Analyze format using dtoa.zip transform.zip. - tool for describe linear normalization, described in the fMRI tutorial page. fmridata.zip. - fMRI data from a finger-tapping block design described in the fMRI tutorial page. efmridata.zip. - fMRI data from a finger-tapping event-related design described in the efMRI tutorial page. npm.zip. - VBM data examining epilepsy from the NPM tutorial page. efmri.zip. - tool for designing better experiments, described in the Creating fMRI experiments section.